TRRUST Database (indra.sources.trrust)¶
This module provides an interface to the TRRUST knowledge base and extracts TF-target relationships as INDRA Statements.
TRRUST is available at https://www.grnpedia.org/trrust/, see also https://www.ncbi.nlm.nih.gov/pubmed/29087512.
TRRUST API (indra.sources.trrust.api)¶
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indra.sources.trrust.api.process_from_web()[source]¶ Return a TrrustProcessor based on the online interaction table.
Returns: A TrrustProcessor object that has a list of INDRA Statements in its statements attribute. Return type: TrrustProcessor
TRRUST Processor (indra.sources.trrust.processor)¶
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class
indra.sources.trrust.processor.TrrustProcessor(df)[source]¶ Processor to extract INDRA Statements from Trrust data frame.
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df¶ The Trrust table to process.
Type: pandas.DataFrame
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statements¶ The list of INDRA Statements extracted from the table.
Type: list[indra.statements.Statement]
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